The CDC Is Withdrawing Its Original PCR Test for COVID—Here’s Why That’s a Good Thing

Why the CDC Will No Longer Use Its Original COVID Test?
You don’t have to dig deep to find the main reason the CDC wants to stop using its original polymerase chain reaction (PCR) test for SARS-CoV-2—just look at the agency’s announcement. It encourages labs to switch to tests that can look for this coronavirus and flu viruses at the same time. The CDC itself has even designed a test that can do just that, and it got the green light from the FDA in July 2020.

“The CDC has recognized that it would become increasingly important to test for both COVID and other viruses, like influenza and RSV [respiratory syncytial virus] as we move into the fall and winter,” says Matthew Binnicker, PhD, director of clinical virology in Mayo Clinic’s Division of Clinical Microbiology.

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That doesn’t mean the CDC’s original test (known as CDC 2019-nCoV Real-Time RT-PCR Diagnostic Panel) was falsely picking up influenza infections as COVID cases, though. Rather, it was only looking for SARS-CoV-2 and ignoring genetic material from other viruses entirely. It couldn’t tell a lab whether your sample contained any viral material, just whether it had genetic material from the COVID coronavirus. And the genetic material it looks for is highly specific, kind of like a unique fingerprint, so it can’t be confused with that of another virus.

“When you develop and submit a new test for authorization from the FDA, you have to show that you checked the specific genetic sequence you’re testing for against similar and related organisms, and that there’s no cross-reactivity. Your test has to be specific for that organism you’re trying to measure,” explains Dwayne Breining, MD, executive director and medical director of Northwell Health Laboratories. “There’s a reason why the people who developed this type of testing won a Nobel prize back in the day. PCR tests are among the most accurate clinical tests that have ever been developed.”

Bottom line: The CDC’s original PCR test for COVID isn’t going away because of inaccurate results—it’s just that there are more comprehensive tests available that can help doctors figure out whether you have COVID, the flu, or some other bug, and give you the right treatment. Taking this test “off the market” helps push labs to adopt those other tests that can check for multiple viruses.

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Tons of New COVID Tests Available
Experts say that, while not explicitly mentioned in the announcement, there is another big reason behind the CDC’s latest move. It has to do with the sheer number of tests that have received EUA since the CDC’s PCR test first debuted in February 2020, when there was a huge need for testing and no other options in the US. The CDC, as a federal agency, was uniquely positioned to rapidly create an effective test and deploy it to government-run labs across the country.

“The CDC does this in special circumstances for new and emerging pathogens, like COVID. They had also done a similar thing for Ebola and the Zika virus,” says Dr. Breining.

Since then, hundreds of new tests have become available across the country. And while they often rely on the same PCR technology used in the CDC’s first test, many of the newer tests are much more efficient for labs to process, allowing them to conduct far more testing on a daily basis without compromising accuracy.

“The CDC is not really in the testing business per se,” explains Dr. Breining. He explains that the CDC rolled out the first test quickly to jumpstart the country’s ability to test for SARS-CoV-2. That paved the way for other groups, like private companies and nonprofit organizations, to develop new COVID-19 tests. “Once the industry is on its feet, the CDC typically backs away from the situation so they can move onto the next thing,” he says. “That pattern of the CDC developing the testing then backing away is typical.”

In other words, this is just business as usual—not a reflection of the quality or accuracy of the original PCR test for COVID.

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What Does This Mean For You?
The CDC’s move shouldn’t cause any issues for people who need a COVID test. For one, it’s only withdrawing its EUA request for its own test. It won’t impact the hundreds of other tests still in use.

Plus, very few labs in the country are still using this test, says Dr. Breining. The CDC has only been providing its original PCR test for COVID to certain public health laboratories run by the government—not hospitals or commercial laboratories where many COVID tests are processed. Those that are still using this test will have until the end of the year to switch to another option, such as the CDC’s “multiplex assay,” which tests for COVID and multiple flu strains, per the agency’s announcement.

“For the most part, it’ll change nothing. Almost every laboratory moved beyond the CDC COVID testing assay many months ago. If a person did happen to use a lab that used the CDC assay, that lab would have switched over to another test and it will be seamless for the person who gets testing done,” says Dr. Breining.

What’s more, moving toward comprehensive testing for multiple viruses at the same time can offer major benefits to both individuals and public health. Knowing which type of infection a patient has gives doctors the opportunity to prescribe the right treatment early on, says Dr. Binnicker. It will also provide officials with more data on clusters of COVID, the flu, and other infections, so they can “save time and resources” during flu season, the CDC points out.

In the meantime, doctors and public health experts continue to fight the myths about the CDC’s recent announcement and the COVID-19 “infodemic.”

“Any time an organization or company or government agency takes something away, there’s always going to be questions, and people are going to fill that empty space with misinformation and rumors about what happened,” says Dr. Binnicker. “But the consensus in the laboratory testing community and healthcare community is that the CDC implemented their test during the early stages of the pandemic to respond to an unmet need, and now that need has been met by more than 200 different diagnostic tests that, in some cases, are faster and sometimes provide physicians with more information.

Editor: Steve (The Guy who Knows some Stuff).